Current projects


Screenshot DeepLearning Analysis

Deep learning analysis for image classification and regression

Collaborators: Luther Mc Donald, Tolga Tasdizen
Departments: Dept. Civil and Environment Engineering, SCI Institute

We performed deep learning analysis on two distinct materials, performing both image classification and image regression tasks by temperature. We applied, compared and… Read more
Radiology Data Workflow

Big data engineering workflow for AI in radiology

Collaborator: Joyce Schroeder
Department: Radiology and Imaging Sciences

In partnership with researchers from the Radiology Department, the Enterprise Data Warehouse (EDW) and the Center for High Performance Computing (CHPC), we have developed software and hardware infrastructure to support… Read more
cTracks top view

Web-based visualization of genomics data

Collaborators: Elaine Gee and Jacob Durtschi
Company: ARUP Laboratories

ARUP and the SCI Institute are teaming to collaboratively create innovative methods and tools for the understanding of complex genetic information. The focus of this project is the creation of a web-based visualization… Read more
Pig skin model

Minipig brain model creation

Collaborator: Ken Monson, Ginu Unnikrishnan, Aravind Sundaramurthy
Department: Mechanical Engineering - UofU, Biotechnology HPC Software Applications Institute - BHSAI

We are developing a 3-D geometry dataset of the Gottingen minipig brain and cerebral blood vessels for use in a finite… Read more

XNAT-based data management and brain MRI analysis workflow

Collaborator: Chris Butson, PhD
Department: Biomedical Engineering

We have developed an imaging informatics framework, enabling data storage, data management and analysis of brain MRI images in a secured environment.
The imaging informatics platform XNAT, used as a research database, is… Read more



Past projects



VISOAR as a digital pathology solution

Collaborator: Mohamed Salama MD
Assoc Prof Pathology, ARUP

We propose to develop a platform that enables easy access to high resolution images for histological applications. Our preliminary study demonstrates how the VISOAR tool developed at the SCI Institute (based on the ViSUS framework)…

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Open data tools for connectomics

Collaborators: Robert Marc, PhD, Bryan Jones, PhD
Department: Ophthalmology, Moran Eye Center

We are currently engaged in annotating the worlds first complete connectome with all the resolution and molecular profiling required to elucidate connectivity and network function. We are dedicated to… Read more
BIDAC MouseStudy

MRI and DTI analysis of Hoxb8 mouse model of OCD

Collaborators: Naveen Nagarajan, PhD, Mario Capecchi, PhD
Department: Human Genetics

Obsessive Compulsive disorder (OCD) is a devastating anxiety disorder that is characterized by recurrent, unwanted thoughts (obsessions) and/or repetitive behaviors (compulsions). To understand the… Read more

Isotopic 3D Reconstruction of SPIM data in Real-Time

Collaborators: Christopher Rodesch, PhD, Mike Redd, PhD
Departments: Neurobiology and Anatomy, Fluorescence Microscopy Core

The HSC Fluorescence Microscopy Core is in the process of assembling a Single Plane Illumination Microscope (SPIM) for the real time visualization of large format…

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